[2021-2024] Effective Analysis of Big Data Through Graph Visualization with A Unified Complexity Management Framework
[Funded by TUBITAK]
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[2021-2022] Detecting and preventing fraud in telecom networks through graph based modeling, querying and visualization
[Funded by TUBITAK and Turkcell Technology]
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[2019-2021] Big graph visualization and analysis using advanced querying, fast layout and complexity management techniques
[Funded by TUBITAK and Huawei-Turkey]
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[2018-2020] Efficient Layout Algorithms for Compound Graphs With Support for Ports and Constraints
[Funded by TUBITAK]
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[2014-]  Newt Pathway Viewer and Editor
[In collaboration with the Demir Lab at OHSU, USA, and EISBM, France]
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[2016-] PathwayMapper (An Interactive and Collaborative Graphical Curation Tool for Cancer Pathways)
[In collaboration with MSKCC, USA]
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[2014-2016] SBGNViz (Methods and Tools for Effective Analysis of Biological Processes with SBGN Diagrams)
[In collaboration with the Demir Lab at OHSU, USA][Funded by TUBITAK]
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[2011-]  cBio Cancer Genomics Portal pathway views
[In collaboration with MSKCC & Dana-Farber Cancer Institute / Harvard Medical School, USA, and others]
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[2014-]  Cytoscape.js compound support and various extensions
[In collaboration with Donnelly Centre for Cellular & Biomolecular Research, University of Toronto, Canada]
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[2011-2013] Cytoscape Web compound support
[In collaboration with Donnelly Centre for Cellular & Biomolecular Research, University of Toronto, Canada]
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[2007-]  ChiBE (Chisio BioPAX Editor)
[In collaboration with Net Bio Lab at UMass Boston, USA]
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| [2006-2009] PVS - VISIBIOweb (Pathway Visualization Services)
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[2006-2014] Chisio (Compound or Clustered Graph Visualization Tools)
[Funded by TUBITAK]
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[2000-2011] PATIKA (Pathway Analysis Tool for Integration and Knowledge Acquisition)
[Funded by TUBITAK]
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[2000-2001] Complexity Management Techniques in Graph Visualization Cntd.
[Funded by Tom Sawyer Software, USA]
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[2000] Complexity Management Techniques in Graph Visualization
[Funded by Tom Sawyer Software, USA]
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