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The i-Vis Research Lab conducts or participates in the following projects and tools:
| [2025-2027] Static and incremental automatic layout algorithms for compound graphs [Funded by TUBITAK (ARDEB #125E061)] |
| [2024-2025] SAA: Supporting the software development process with visualization-based methods using software analytics [Funded by TUBITAK (ARDEB #123E492)] |
| [2021-2024] Effective Analysis of Big Data Through Graph Visualization with A Unified Complexity Management Framework [Funded by TUBITAK (ARDEB #121E230)] |
| [2021-2022] Detecting and preventing fraud in telecom networks through graph based modeling, querying and visualization [Funded by TUBITAK (TEYDEB #5200049) and Turkcell Technology] |
| [2019-2021] Big graph visualization and analysis using advanced querying, fast layout and complexity management techniques [Funded by TUBITAK (TEYDEB #5180088) and Huawei-Turkey] |
| [2018-2020] Efficient Layout Algorithms for Compound Graphs With Support for Ports and Constraints [Funded by TUBITAK (ARDEB #118E131)] |
[2014-]  Newt Pathway Viewer and Editor[In collaboration with the Demir Lab at OHSU, USA, and EISBM, France] |
| [2016-] PathwayMapper (An Interactive and Collaborative Graphical Curation Tool for Cancer Pathways) [In collaboration with MSKCC, USA] |
| [2014-2016] SBGNViz (Methods and Tools for Effective Analysis of Biological Processes with SBGN Diagrams) [In collaboration with the Demir Lab at OHSU, USA][Funded by TUBITAK] |
[2011-]  cBio Cancer Genomics Portal pathway views[In collaboration with MSKCC & Dana-Farber Cancer Institute / Harvard Medical School, USA, and others] |
[2014-]  Cytoscape.js compound support and various extensions[In collaboration with Donnelly Centre for Cellular & Biomolecular Research, University of Toronto, Canada] |
| [2011-2013] Cytoscape Web compound support [In collaboration with Donnelly Centre for Cellular & Biomolecular Research, University of Toronto, Canada] |
[2007-]  ChiBE (Chisio BioPAX Editor)[In collaboration with Net Bio Lab at UMass Boston, USA] |
| [2006-2009] PVS - VISIBIOweb (Pathway Visualization Services) |
| [2006-2014] Chisio (Compound or Clustered Graph Visualization Tools) [Funded by TUBITAK (ARDEB #111E036)] |
| [2000-2011] PATIKA (Pathway Analysis Tool for Integration and Knowledge Acquisition) [Funded by TUBITAK (ARDEB #104E049)] |
| [2000-2001] Complexity Management Techniques in Graph Visualization Cntd. [Funded by Tom Sawyer Software, USA] |
| [2000] Complexity Management Techniques in Graph Visualization [Funded by Tom Sawyer Software, USA] |
The lab is also involved in community projects such as BioPAX (Biological Pathways Exchange) and SBGN (Systems Biology Graphical Notation).
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